miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|86113352|gb|BB924561.1|BB924561 CTTCCATAAACGGCTTTAGTCTTTCTTCTTTGTCACATGCCAAAACTTCTATCAAGAAAACTACATTGAGACCCTTTGCA
TCTCTTAACTCTTCTTCTTCCTCTTCATCTTCTACTTTCCCTTCTCTTATTCAAGACAAACCTGTTTTTGCTTCCTCTTC
TCCTTTCATCACTCCAATTTTGAGAGAAGAAATGGGAAAGGGTTATGAAGAAGCAATTCAAGAACTCGAGAAATTGTTGA
GGGAGAAGGCCGACTTGAAAGCCACAGCAGCTGAAAAGGTTGAACAAATAACAGCTCAACTTGGATCAGTTACAGCTCAA
GCTGCAACACCATCATCATCTGATGGTATTCCAACATCTGAAGCCTCAGAGAGGATCAAAACTGGTTTCATTCACTTCAA
GAAAGAGAAATATGACAAGAATCCAGCTTTGTATGGTGAACTTGCCAAAGGCCAAAGCCCCCCGTATATGGTGTTTGCAT
GCTCAGACTCAAGAGTCTGCCCATCTCATGTGCTAGATTTCCAGCCAGGAGAAGCTTTTGTAGTCAGAAATGTTGCTAAC
T




Most similar to sp|P17067|CAHC_PEA

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P17067|CAHC_PEA Carbonic anhydrase, chloroplastic OS=Pisum
           sativum PE=1 SV=1
          Length = 328

 Score =  299 bits (766), Expect = 7e-81
 Identities = 157/188 (83%), Positives = 165/188 (87%), Gaps = 2/188 (1%)
 Frame = +3

Query: 3   SINGFSLSSLSHAKTSIKKTTLRPF--ASLNXXXXXXXXTFPSLIQDKPVFASSSPFITP 176
           SINGFSLSSLS AKTS K+TTLRPF  ASLN        TFPSLIQDKPVFASSSP ITP
Sbjct: 5   SINGFSLSSLSPAKTSTKRTTLRPFVSASLNTSSSSSSSTFPSLIQDKPVFASSSPIITP 64

Query: 177 ILREEMGKGYEEAIQELEKLLREKADLKATAAEKVEQITAQLGSVTAQAATPSSSDGIPT 356
           +LREEMGKGY+EAI+EL+KLLREK +LKATAAEKVEQITAQLG       T SSSDGIP 
Sbjct: 65  VLREEMGKGYDEAIEELQKLLREKTELKATAAEKVEQITAQLG-------TTSSSDGIPK 117

Query: 357 SEASERIKTGFIHFKKEKYDKNPALYGELAKGQSPPYMVFACSDSRVCPSHVLDFQPGEA 536
           SEASERIKTGF+HFKKEKYDKNPALYGELAKGQSPP+MVFACSDSRVCPSHVLDFQPGEA
Sbjct: 118 SEASERIKTGFLHFKKEKYDKNPALYGELAKGQSPPFMVFACSDSRVCPSHVLDFQPGEA 177

Query: 537 FVVRNVAN 560
           FVVRNVAN
Sbjct: 178 FVVRNVAN 185